BtaEX0004679 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002295 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:784]
Coordinates
chr2:21790311-21796188:+
Coord C1 exon
chr2:21790311-21790439
Coord A exon
chr2:21794399-21794577
Coord C2 exon
chr2:21796074-21796188
Length
179 bp
Sequences
Splice sites
3' ss Seq
TCCATCTCATTACTAAATAGGAA
3' ss Score
7.29
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
ATGCCTCTAGATTTATCTCCTCTTGCAACACCCATCATAAGAAGCAAAATTGAGGAGCCTTCTGTTGTAGAAACAACTCACCAGGATAGTCCTTTACCTCACCCAGAGTCTACTACCAGTGATGAGAAG
Seq A exon
GAAGTACCATTGGCACAAACTGCACAGCCCACATCAGCTATTGTTCGTCCAGCATCTTTACAAGTTCCCAATGTGCTGCTTACAAGTTCTGACTCAAGTGTCATTATTCAGCAGGCAGTACCTTCACCAACCTCAAGTACTGTAATCACCCAGGCACCGTCCTCCAACAGGCCAATTGT
Seq C2 exon
TCCTGTACCAGGCCCATTTCCTCTTCTCTTACATCTTCCTAATGGACAAACCATGCCTGTTGCTATTCCTGCATCAATCACAAGTTCTAATGTGCATGTTCCAGCTGCAGTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002295_MULTIEX3-4/6=3-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.744 A=0.608 C2=0.654
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTAGATTTATCTCCTCTTGCA
R:
TGGAACTGCAGCTGGAACATG
Band lengths:
242-421
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: protein array. ELM ID: ELMI003089; ELM sequence: RPASLQV; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development