RnoEX0012530 @ rn6
Exon Skipping
Gene
ENSRNOG00000001597 | Atf2
Description
activating transcription factor 2 [Source:RGD Symbol;Acc:621862]
Coordinates
chr3:60744743-60752875:-
Coord C1 exon
chr3:60752747-60752875
Coord A exon
chr3:60748411-60748589
Coord C2 exon
chr3:60744743-60744829
Length
179 bp
Sequences
Splice sites
3' ss Seq
TTTATCTTAAAATTAAATAGGAA
3' ss Score
6.55
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
ATGCCTCTAGATCTGTCCCCTCTTGCAACACCCATCATAAGAAGCAAAATTGAGGAACCTTCTGTTGTAGAAACAACTCACCAGGATAGCCCGTTACCTCACCCCGAGTCTACTACCAATGATGAAAAG
Seq A exon
GAAATACCATTGGCACAAACTGCACAGCCCACATCAGCTATCGTTCGTCCAGCATCATTACAGGTTCCCAATGTGCTGCTCACAAGTTCTGACTCAAGTGTAATTATTCAACAAGCAGTACCTTCACCAACCTCAAGTACTGTAATCACCCAGGCACCATCCTCTAACAGGCCAATTGT
Seq C2 exon
CTTGTTCGGCCAGTCACCATGGTGCCTAGTGTTCCAGGAATCCCAGGCCCTTCCTCTCCTCAACCGGTCCAGTCAGAAGCAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001597_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=0.633 C2=0.937
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCTAGATCTGTCCCCTC
R:
TTTTGCTTCTGACTGGACCGG
Band lengths:
212-391
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: protein array. ELM ID: ELMI003089; ELM sequence: RPASLQV; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]