BtaEX0005021 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011156 | ATP8A1
Description
probable phospholipid-transporting ATPase IA [Source:RefSeq peptide;Acc:NP_777263]
Coordinates
chr6:63030387-63048135:-
Coord C1 exon
chr6:63048047-63048135
Coord A exon
chr6:63033330-63033402
Coord C2 exon
chr6:63030387-63030492
Length
73 bp
Sequences
Splice sites
3' ss Seq
CTCCATTTTTTCCCCTTTAGGCA
3' ss Score
10.05
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
GTGAAATATATATTTTCTGACAAAACTGGTACTTTGACATGCAATGTAATGCAGTTTAAGAAGTGCACCATAGCCGGAGTGGCTTACGG
Seq A exon
GCAGAACTCACAGTTTGGAGATGAAAAAACATTTAGTGATTCATCATTGCTGGAAAACCTCCAAAATAATCAT
Seq C2 exon
CCCACTGCACCAATAATATGTGAATTTCTTACAATGATGGCCGTGTGTCACACGGCAGTACCAGAGCGGGAAGGTGATAAGATTATTTACCAGGCAGCATCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011156-'18-22,'18-20,20-22
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.100 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=PU(6.7=86.7)
A:
PF127102=HAD=FE(6.2=100)
C2:
PF127102=HAD=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAACTGGTACTTTGACATGCA
R:
CTGGAGATGCTGCCTGGTAAA
Band lengths:
176-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development