RnoEX6042354 @ rn6
Exon Skipping
Gene
ENSRNOG00000034200 | Atp8a1
Description
ATPase phospholipid transporting 8A1 [Source:RGD Symbol;Acc:1309619]
Coordinates
chr14:42059132-42081330:+
Coord C1 exon
chr14:42059132-42059220
Coord A exon
chr14:42079272-42079344
Coord C2 exon
chr14:42081225-42081330
Length
73 bp
Sequences
Splice sites
3' ss Seq
GCTTTATTTTCCCCCTTTAGGCA
3' ss Score
10.37
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GTTAAATACATATTTTCCGACAAAACCGGGACCCTGACGTGCAATGTGATGCAGTTCAAGAAGTGCACCATCGCGGGCGTGGCTTACGG
Seq A exon
GCAGAGCTCACAGTTTGGAGATGAGAAAACCTTTAATGATCCGTCGTTGCTGGAAAATCTTCAGAATAACCAT
Seq C2 exon
CCAACCGCACCTATCATCTGTGAATTTCTCACAATGATGGCCGTCTGCCACACAGCTGTACCAGAGAGAGACGGGGAGAAGATCATTTATCAGGCAGCGTCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034200-'16-20,'16-18,18-20=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.144 C2=0.011
Domain overlap (PFAM):
C1:
PF127102=HAD=PU(6.7=86.7)
A:
PF127102=HAD=FE(6.2=100)
C2:
PF127102=HAD=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCCGACAAAACCGGGACC
R:
GCGACGCTGCCTGATAAATGA
Band lengths:
180-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]