MmuEX6017964 @ mm9
Exon Skipping
Gene
ENSMUSG00000037685 | Atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:MGI Symbol;Acc:MGI:1330848]
Coordinates
chr5:68140290-68152441:-
Coord C1 exon
chr5:68152353-68152441
Coord A exon
chr5:68142252-68142324
Coord C2 exon
chr5:68140290-68140395
Length
73 bp
Sequences
Splice sites
3' ss Seq
TGCTTTGTTTTTCCCTTTAGGCA
3' ss Score
11.73
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
GTTAAATACATATTTTCTGACAAAACTGGGACCCTGACATGCAATGTGATGCAGTTCAAGAAGTGCACCATCGCGGGCGTGGCCTATGG
Seq A exon
GCAGAGCTCACAGTTTGGAGATGAAAAAACCTTTAATGACCCGTCGTTGCTGGACAATCTCCAGAATAACCAC
Seq C2 exon
CCAACCGCACCTATCATCTGTGAATTTCTCACAATGATGGCCGTCTGCCACACAGCTGTACCGGAGAGAGAAGGGGACAAGATCATTTATCAGGCTGCATCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037685-'27-25,'27-23,29-25=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.170 C2=0.019
Domain overlap (PFAM):
C1:
PF127102=HAD=PU(40.6=86.7)
A:
PF127102=HAD=PD(34.4=88.0)
C2:
PF127102=HAD=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTGGGACCCTGACATGC
R:
GCGATGCAGCCTGATAAATGA
Band lengths:
171-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: