GgaEX6035631 @ galGal3
Exon Skipping
Gene
ENSGALG00000014236 | ATP8A1
Description
NA
Coordinates
chr4:70084392-70089884:+
Coord C1 exon
chr4:70084392-70084480
Coord A exon
chr4:70088339-70088411
Coord C2 exon
chr4:70089779-70089884
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTTTACCAAATTACTTCTAGGCA
3' ss Score
7.08
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GTCAAATACATATTTTCTGATAAAACGGGTACTCTGACATGCAACGTCATGCAGTTTAAAAAATGTACTGTGGCAGGAGTTGCTTATGG
Seq A exon
GCAGGGCTCACAAAATGGAGACGAAAAAATGTTTAGTGACTCATCCCTACTGGAGAATCTTCAAAATAATCAT
Seq C2 exon
CCGACTGCACCTATTATATGTGAGTTTTTGACAATGATGGCAGTGTGTCATACAGCTGTTCCAGAAAGAGAAGGTGATAAGATTATATATCAAGCAGCATCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236-'15-20,'15-19,17-20=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.080 C2=0.019
Domain overlap (PFAM):
C1:
PF127102=HAD=PU(6.7=86.7)
A:
PF127102=HAD=FE(6.2=100)
C2:
PF127102=HAD=FE(9.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTACTCTGACATGCAACG
R:
TGGAGATGCTGCTTGATATATAATCT
Band lengths:
169-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]