GgaEX6035631 @ galGal4
Exon Skipping
Gene
ENSGALG00000014236 | ATP8A1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:HGNC Symbol;Acc:HGNC:13531]
Coordinates
chr4:67793789-67797804:+
Coord C1 exon
chr4:67793789-67793833
Coord A exon
chr4:67796259-67796331
Coord C2 exon
chr4:67797699-67797804
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTTTACCAAATTACTTCTAGGCA
3' ss Score
7.08
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
CCATTGCCCTGAACCTGAGGACTATAGTGTTCCTTCAGATGATTG
Seq A exon
GCAGGGCTCACAAAATGGAGACGAAAAAATGTTTAGTGACTCATCCCTACTGGAGAATCTTCAAAATAATCAT
Seq C2 exon
CCGACTGCACCTATTATATGTGAGTTTTTGACAATGATGGCAGTGTGTCATACAGCTGTTCCAGAAAGAGAAGGTGATAAGATTATATATCAAGCAGCATCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236-'24-27,'24-25,25-27=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.240 C2=0.056
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(3.7=100)
A:
PF127102=HAD=FE(5.9=100)
C2:
PF132461=Hydrolase_like2=PU(21.8=61.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTGCCCTGAACCTGAGGA
R:
CTGGAGATGCTGCTTGATATATAATC
Band lengths:
151-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]