BtaEX0006516 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012210 | C5
Description
complement C5a anaphylatoxin precursor [Source:RefSeq peptide;Acc:NP_001160088]
Coordinates
chr8:112315925-112319847:-
Coord C1 exon
chr8:112319756-112319847
Coord A exon
chr8:112318350-112318432
Coord C2 exon
chr8:112315925-112316015
Length
83 bp
Sequences
Splice sites
3' ss Seq
AAAATATTTTGCTTCCATAGATA
3' ss Score
8.47
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
GATCCCGAAGGATCAGAAGTTGACATGGTAGAAGAAAATGATTATACTGGAATTATTTCTTTTCCTGACTTCAAGATTCCATCTAATCCTAA
Seq A exon
ATACGGTGTGTGGACCATTCGAGCTAAATATAAAGAAGACTTTTCAACAACTGGAACCGCATATTTTGAAATTAAAGAATATG
Seq C2 exon
TGTTGCCACATTTTTCTATCTCAATAGAACCAAAAAGTAATTTCATTGGTTATAAGGACTTTACTAATTTTGAAATTACTATAAGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012210_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(31.6=100)
A:
PF0183514=A2M_N=PD(25.3=82.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGGATCAGAAGTTGACATGGT
R:
TCTATTGAGATAGAAAAATGTGGCAA
Band lengths:
115-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development