GgaEX0001809 @ galGal3
Exon Skipping
Gene
ENSGALG00000001565 | C5
Description
NA
Coordinates
chr17:9041592-9043343:-
Coord C1 exon
chr17:9043252-9043343
Coord A exon
chr17:9042144-9042226
Coord C2 exon
chr17:9041592-9041682
Length
83 bp
Sequences
Splice sites
3' ss Seq
TGGTTGTTGATTTATTGTAGGTA
3' ss Score
7.67
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
GATCCAGATGGAGTAAAAGTGGATATCATAGAAGAAAACGACTTTACTGGAATAGTTTCTTTTCCTGATTTCAAGATTCCTCCTAATCCCAA
Seq A exon
GTATGGAATTTGGAAGATTGAAGCAAAGTACAAGAAGAATTTCATAACTTCAGCTGTTGCAAAATTTGAAGTTAAAGAATACG
Seq C2 exon
CTATGCCAAGCTTTTCCATTGTCATAGAGCCAGAAAATAACTTCATTAGTTCTGATAAATTTGAGAACTTCAGGATTGCTGTGAAAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001565-'5-7,'5-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(31.6=100)
A:
PF0183514=A2M_N=PD(25.3=82.8)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGATGGAGTAAAAGTGGATATCA
R:
TCACAGCAATCCTGAAGTTCTCA
Band lengths:
174-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]