DreEX0017778 @ danRer10
Exon Skipping
Gene
ENSDARG00000021004 | c5
Description
complement component 5 [Source:ZFIN;Acc:ZDB-GENE-120510-2]
Coordinates
chr5:62811712-62814423:-
Coord C1 exon
chr5:62814329-62814423
Coord A exon
chr5:62811881-62811963
Coord C2 exon
chr5:62811712-62811802
Length
83 bp
Sequences
Splice sites
3' ss Seq
CACAATCCAAACCCCACCAGTTA
3' ss Score
1.98
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GACCCTAGAGGTGTCAAAGTAGAGATTATTGATATGACTGACATCAATGGAGCAAAACCACTTCTTCCACCATTCAAAATACCTTTAAAGCCAAT
Seq A exon
TTATGGAATCTGGAAAATTGTGGCCACATATGCTGACAATTTTGAAACGACTGCTACTGCTGAGTTTGAGGTCAAAGAATATG
Seq C2 exon
TGTTGCCCAGTATTTCGGTCCAAATTGAGCCGGAAACCAACTACATCAGTGAAGAAAACTTTGACACTTTCAAGCTGAAGATCTCAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021004-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF065166=NUP=PD(3.1=6.2),PF0183514=A2M_N=FE(32.3=100)
A:
PF0183514=A2M_N=PD(25.0=82.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTAGAGGTGTCAAAGTAGAGA
R:
TGAGATCTTCAGCTTGAAAGTGTCA
Band lengths:
179-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]