RnoEX6016556 @ rn6
Exon Skipping
Gene
ENSRNOG00000018899 | C5
Description
complement C5 [Source:RGD Symbol;Acc:2237]
Coordinates
chr3:14207509-14212077:-
Coord C1 exon
chr3:14211986-14212077
Coord A exon
chr3:14210054-14210136
Coord C2 exon
chr3:14207509-14207599
Length
83 bp
Sequences
Splice sites
3' ss Seq
TAAATATTTCGCCTCCACAGGTA
3' ss Score
10.39
5' ss Seq
ATGGTAATC
5' ss Score
4.14
Exon sequences
Seq C1 exon
GATCCCGAAGGAACAGAAGTTGACATCGTAGAAGAAAATGATTATACTGGAATTATCTCTTTTCCTGACTTCAAGATTCCATCTAATCCCAA
Seq A exon
GTATGGTGTATGGACAATTAAAGCTAAATATAAGAAGGATTTTACAACGACTGGAACTGCATACTTTGAAGTTAAAGAATATG
Seq C2 exon
TCTTGCCCCGATTCTCTGTATCAATAGAACCAGAAAGCAACTTCATTGGCTATAAGAACTTTAAGAACTTTGAAATCACTGTGAAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018899-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(31.6=100)
A:
PF0183514=A2M_N=PD(25.3=82.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGGAACAGAAGTTGACATCG
R:
TGCTTTCACAGTGATTTCAAAGT
Band lengths:
176-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]