BtaEX0007294 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000505 | CCBL2
Description
Bos taurus cysteine conjugate-beta lyase 2 (CCBL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075370]
Coordinates
chr3:55118879-55126970:+
Coord C1 exon
chr3:55118879-55119023
Coord A exon
chr3:55120990-55121139
Coord C2 exon
chr3:55126884-55126970
Length
150 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTTTTCACTCAACAGGGT
3' ss Score
9.92
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GATTGAATTTACCAAACTGGCTGCAGACCCTTCTGTTGTGAATCTTGGCCAAGGCCTTCCAGATATATCCCCTCCTGTATATGTAAAGGAAGAATTATCCAAGATTGCAGCAATTGATAATCTGAATCAGTACACACGGGGCTTT
Seq A exon
GGTCATCCATCACTTGTGAAAGCTCTGTCCTGCCTATATGAAAAGTTTTATCACAATAAAATCAATCCAAATGAAGAAATCCTTGTGACAGTAGGAGCATATGGATCTCTTTTTAATGCCATTCAAGGATTGATTGATGAGGGGGATGAA
Seq C2 exon
GTCATAGTGATAGTGCCTTTCTTTGACTGCTATGAGTCCATGGTGAGAATGGCTGGAGCAACACCTGTTTTTGTTCCCCTGAGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000505-'10-9,'10-8,11-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=PU(9.9=77.6)
A:
PF0015516=Aminotran_1_2=FE(12.7=100)
C2:
PF0015516=Aminotran_1_2=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATTTACCAAACTGGCTGCA
R:
TCTCAGGGGAACAAAAACAGGTG
Band lengths:
226-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development