MmuEX6074474 @ mm9
Exon Skipping
Gene
ENSMUSG00000040213 | Ccbl2
Description
cysteine conjugate-beta lyase 2 [Source:MGI Symbol;Acc:MGI:2677849]
Coordinates
chr3:142383325-142388471:+
Coord C1 exon
chr3:142383325-142383469
Coord A exon
chr3:142386079-142386228
Coord C2 exon
chr3:142388385-142388471
Length
150 bp
Sequences
Splice sites
3' ss Seq
CCTAATCTTTAATACAACAGGGT
3' ss Score
3.57
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GGTTGAATTTACTAAGTTGGCTGCGGATCCTTCTGTGGTGAACCTTGGACAAGGCTTTCCAGATATATCCCCTCCTTCATACGTAAAAGAAGAGTTATCAAAGGCTGCATTTATTGATAACATGAATCAATACACAAGAGGCTTT
Seq A exon
GGTCATCCAGCACTTGTGAAAGCTCTGTCCTGCTTATATGGAAAGATTTATCAACGTCAAATTGATCCAAACGAAGAAATCCTTGTGGCCGTGGGGGCATATGGATCTCTCTTTAACTCCATCCAAGGATTGGTGGACCCAGGAGATGAA
Seq C2 exon
GTGATAATTATGGTGCCTTTTTACGACTGTTATGAGCCCATGGTGAGAATGGCCGGAGCAGTGCCTGTGTTTATTCCCCTGAGATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040213-'7-9,'7-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=PU(16.6=77.6)
A:
PF0015516=Aminotran_1_2=FE(12.8=100)
C2:
PF0015516=Aminotran_1_2=FE(12.2=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATTTACTAAGTTGGCTGCGGA
R:
TCTCAGGGGAATAAACACAGGC
Band lengths:
226-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: