RnoEX6011815 @ rn6
Exon Skipping
Gene
ENSRNOG00000043426 | Kyat3
Description
kynurenine aminotransferase 3 [Source:RGD Symbol;Acc:1359262]
Coordinates
chr2:248662564-248667505:+
Coord C1 exon
chr2:248662564-248662708
Coord A exon
chr2:248665130-248665279
Coord C2 exon
chr2:248667415-248667505
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCTTTAATACAACAGGGT
3' ss Score
6.42
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GGTTGAATTTACCAAGTTGGCCGCGGATTCTTCTGTGGTGAATCTTGGACAAGGTTTTCCTGATATAACCCTTCCTTCATATGTACAAGAAGAATTGTCAAAGGCGGCATTTATTGATAACCTGAATCAATACACAAGGGGCTTT
Seq A exon
GGTCATCCATCACTTGTGAAAGCGCTATCCTGCTTATACGGAAAGATTTATCAAAAGCAAATTGATCCAAATGAAGAAATTCTTGTGACGGTGGGGGGATATGGATCGCTCTTTAATGCCATCCAAGGCTTGGTGGACCCAGGAGATGAA
Seq C2 exon
GTGATAATTATGGTGCCTTTTTACGACTGTTATGAGCCCATGGTGAAAATGGCTGGAGCAGTGCCTGTGTTTATTCCCCTGAGATCTGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043426-'10-8,'10-7,11-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=PU(28.6=77.6)
A:
PF0015516=Aminotran_1_2=FE(36.8=100)
C2:
PF0015516=Aminotran_1_2=FE(22.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGAATTTACCAAGTTGGCCG
R:
ACAGATCTCAGGGGAATAAACACA
Band lengths:
234-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]