GgaEX6044310 @ galGal3
Exon Skipping
Gene
ENSGALG00000006188 | CCBL2
Description
NA
Coordinates
chr8:15837988-15841846:+
Coord C1 exon
chr8:15837988-15838132
Coord A exon
chr8:15839625-15839774
Coord C2 exon
chr8:15841760-15841846
Length
150 bp
Sequences
Splice sites
3' ss Seq
CATTTCTTTGCTTTAAACAGGGG
3' ss Score
8.28
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GGTTGAATTTACAAAGGTGGCAGCAGATCCCTCAATTGTTAATCTTGGTCAAGGCCTTCCTGATATATGCCCTCCCAGCTATGTTAAAGAAGAGCTGGCAAAAGCAGCAGCAGTTGACAGACTGAACCAGTACACACGAGGCTTT
Seq A exon
GGGCATCCATCGCTGGTGAAAGCCTTGTCTCAAGTATATGAGAGAGTTTGTGGAAGAAAGATTGATCCTCTCACAGATATCCTGGTGACAGTAGGAGGTTATGGATCTCTCTTTAGTACAATACAGGCTTTAATTGAAGAGGGAGATGAA
Seq C2 exon
GTAATAATAATAGAGCCATTTTATGACTGTTATGAACCAATGGTAAAGATGGCGGGTGCAAAGCCTGTTTTTATTCCACTGAGATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006188-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=PU(9.9=77.6)
A:
PF0015516=Aminotran_1_2=FE(12.8=100)
C2:
PF0015516=Aminotran_1_2=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGAATTTACAAAGGTGGCAGC
R:
CAGTGGAATAAAAACAGGCTTTGCA
Band lengths:
226-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]