BtaEX0008050 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005293 | CDC25C
Description
Bos taurus cell division cycle 25 homolog C (S. pombe) (CDC25C), mRNA. [Source:RefSeq mRNA;Acc:NM_001097996]
Coordinates
chr7:51315797-51318345:-
Coord C1 exon
chr7:51318244-51318345
Coord A exon
chr7:51317183-51317245
Coord C2 exon
chr7:51315797-51315895
Length
63 bp
Sequences
Splice sites
3' ss Seq
TAGCTCTTGGGTATTTCTAGGTA
3' ss Score
4.91
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
Exon sequences
Seq C1 exon
GGCTTAGGTCTAAAGAAAATGGTCTCCCTCTGTGACATCAATATGACTCAGATGCTGGAGGAAGATTCAAACCAGGGGCCTCTGATTGGTGATTTCTCCAAG
Seq A exon
GTATGTGCACTGCCAACCGTGTCAGGGAAACACCAAGATCTGAAGTACGTCAACCCAGAAACA
Seq C2 exon
GTGGCTGCCTTACTATCAGGGGAGTTCCAGGGTCTGATTGAGAAGTTTTATATCATCGATTGCCGCTATCCATATGAGTACCTGGGAGGACACATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005293_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(13.9=50.0)
A:
NO
C2:
PF0058115=Rhodanese=PU(25.7=84.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCAAACCAGGGGCCTCTG
R:
TGTGTCCTCCCAGGTACTCAT
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development