RnoEX0018921 @ rn6
Exon Skipping
Gene
ENSRNOG00000024008 | Cdc25c
Description
cell division cycle 25C [Source:RGD Symbol;Acc:1311875]
Coordinates
chr18:27531935-27536356:-
Coord C1 exon
chr18:27536255-27536356
Coord A exon
chr18:27534677-27534739
Coord C2 exon
chr18:27531935-27532033
Length
63 bp
Sequences
Splice sites
3' ss Seq
CAGTTCTTGCTTCTTTGTAGGCG
3' ss Score
7.14
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
Exon sequences
Seq C1 exon
GGCTTAAGTCTGAAGAAGACGGTCCCTCTCTGTGGCATGGATGCCATTGAGTTGGAGGAGGAAGATTCTGACTCAGAGCATCTGACTGGTGATTTCTCAAAG
Seq A exon
GCGTGTGTACTGCCAACGGTGCCAGGGAAACACCAGGATCTGAAGTATATCAGCCCAGATACA
Seq C2 exon
GTGGCTGCATTGCTGTCTGGGAAGTTCCAGAGTGTGATCGAGAGGTTTTATATCATTGATTGCCGTTATCCGTATGAGTACCTGGGAGGACACATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024008-'11-17,'11-16,14-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(11.0=55.9)
A:
NO
C2:
PF0058115=Rhodanese=PU(25.0=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGACGGTCCCTCTCTGTG
R:
ACCTCTCGATCACACTCTGGA
Band lengths:
135-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]