HsaEX0014015 @ hg38
Exon Skipping
Gene
ENSG00000158402 | CDC25C
Description
cell division cycle 25C [Source:HGNC Symbol;Acc:HGNC:1727]
Coordinates
chr5:138287169-138290740:-
Coord C1 exon
chr5:138290639-138290740
Coord A exon
chr5:138289520-138289563
Coord C2 exon
chr5:138287169-138287267
Length
44 bp
Sequences
Splice sites
3' ss Seq
CAGCTCTTGTGTATTTCTAGGTA
3' ss Score
8
5' ss Seq
GAAGTATGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
GGCTTATGTTTAAAGAAGACAGTCTCTCTGTGTGACATTACTATCACTCAGATGCTGGAGGAAGATTCTAACCAGGGGCACCTGATTGGTGATTTTTCCAAG
Seq A exon
GTATGTGCGCTGCCAACCGTGTCAGGGAAACACCAAGATCTGAA
Seq C2 exon
GTGGCTGCCTTACTGTCGGGGAAGTTCCAGGGTCTGATTGAGAAGTTTTATGTCATTGATTGTCGCTATCCATATGAGTATCTGGGAGGACACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158402-'19-27,'19-26,20-27
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(14.3=50.0)
A:
NO
C2:
PF0058115=Rhodanese=PU(25.0=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGATTCTAACCAGGGGCA
R:
TGGATGTGTCCTCCCAGATACT
Band lengths:
142-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development