GgaEX0006751 @ galGal3
Exon Skipping
Gene
ENSGALG00000004934 | CDC25A
Description
NA
Coordinates
chr2:481111-481812:+
Coord C1 exon
chr2:481111-481203
Coord A exon
chr2:481554-481616
Coord C2 exon
chr2:481714-481812
Length
63 bp
Sequences
Splice sites
3' ss Seq
AAATGCTGTCTGTTTTCTAGGGT
3' ss Score
8.99
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
AACACAAAAATAGTAAAGACACAGTCCTCTGCAGCAGAAATTGAGAGCATTTTGGCCAGTGACCAGAGGGACCTTATTGGTGACTTCTCAAAG
Seq A exon
GGTTATTTGTTCCACACTGTTGATGGGAAGCATCAAGATTTAAAATACATCGACTCAGAAATG
Seq C2 exon
ATTGTGTCTGTCCTGACTGGAAAGTTTGCAAGCTTCATTAAGGAGTGTGTGATCATTGACTGTCGCTATCCGTACGAGTACGAAGGAGGACACATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934-'16-18,'16-17,17-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(6.5=51.6)
A:
NO
C2:
PF0058115=Rhodanese=PU(26.2=84.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCATTTTGGCCAGTGACC
R:
TGTGTCCTCCTTCGTACTCGT
Band lengths:
144-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]