DreEX0020127 @ danRer10
Exon Skipping
Gene
ENSDARG00000010792 | cdc25b
Description
cell division cycle 25B [Source:ZFIN;Acc:ZDB-GENE-000330-5]
Coordinates
chr13:14788283-14790236:-
Coord C1 exon
chr13:14790150-14790236
Coord A exon
chr13:14788558-14788620
Coord C2 exon
chr13:14788283-14788381
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGCATTTTGTCTTTTTAAAGGCT
3' ss Score
8.18
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GTTCAGAGGTCCAAGTCCTTTAATCACTCACAGATTGAAAGAATGTTGGACACCGATCCTAGTAATGTGATTGGAGATTTTACCAAG
Seq A exon
GCTCCTGCACTGCCCACAGTACAAGGAAAACACCAAGAGTTGAAGTACATCACTCCAGAGATT
Seq C2 exon
ATGGTTAAAGCAATGAGTGGACAGTTTCAAGATCTAGTGGAGAGGCTGTTTGTTATCGACTGCCGTTATCCGTATGAGTATGAAGGCGGCCATATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010792-'15-20,'15-19,16-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.552 A=0.143 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(5.3=48.3)
A:
NO
C2:
PF0058115=Rhodanese=PU(25.9=84.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATGTTGGACACCGATCCT
R:
GCCGCCTTCATACTCATACGG
Band lengths:
138-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]