HsaEX6077028 @ hg19
Exon Skipping
Gene
ENSG00000101224 | CDC25B
Description
cell division cycle 25 homolog B (S. pombe) [Source:HGNC Symbol;Acc:1726]
Coordinates
chr20:3782928-3783853:+
Coord C1 exon
chr20:3782928-3783023
Coord A exon
chr20:3783557-3783619
Coord C2 exon
chr20:3783755-3783853
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATCCCTTCCGTTCCCTTCAGGCC
3' ss Score
11.46
5' ss Seq
ACGGTAAAC
5' ss Score
5.88
Exon sequences
Seq C1 exon
AAAGCCCGCGTCCTCCGCTCAAAATCACTGTGTCACGATGAGATCGAGAACCTCCTGGACAGTGACCACCGAGAGCTGATTGGAGATTACTCTAAG
Seq A exon
GCCTTCCTCCTACAGACAGTAGACGGAAAGCACCAAGACCTCAAGTACATCTCACCAGAAACG
Seq C2 exon
ATGGTGGCCCTATTGACGGGCAAGTTCAGCAACATCGTGGATAAGTTTGTGATTGTAGACTGCAGATACCCCTATGAATATGAAGGCGGGCACATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101224-'13-22,'13-21,15-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.173 C2=0.078
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(21.5=53.1)
A:
NO
C2:
PF0058115=Rhodanese=PU(25.0=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCACCGAGAGCTGATTG
R:
CTTGATGTGCCCGCCTTCATA
Band lengths:
134-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)