BtaEX6065040 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008436 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr13:51856541-51857641:-
Coord C1 exon
chr13:51857546-51857641
Coord A exon
chr13:51856782-51856844
Coord C2 exon
chr13:51856541-51856639
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCACCTTCCCTTCAGGCC
3' ss Score
11.62
5' ss Seq
ACGGTATGC
5' ss Score
8.56
Exon sequences
Seq C1 exon
AAAGCCCGCATTCTCCGCTCAAAGTCTCTGTGTCATGATGAAATTGAGAATATCCTGGACAGTGACCACCGAGAACTGATCGGGGATTACTCCAAG
Seq A exon
GCCTTCCTCCTACAGACTGTGGATGGAAAGCACCAAGACCTCAAGTACATCTCACCAGAAACG
Seq C2 exon
GTGGTGGCTCTGCTGACAGGCAAGTTCAGCCACATCGTGGAGAAGTTTGTGATTGTTGACTGCAGATACCCCTATGAGTATGAAGGCGGGCACATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008436-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(8.9=53.1)
A:
NO
C2:
PF0058115=Rhodanese=PU(25.0=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGACCACCGAGAACTGA
R:
TTGATGTGCCCGCCTTCATAC
Band lengths:
136-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]