MmuEX0010358 @ mm10
Exon Skipping
Gene
ENSMUSG00000027330 | Cdc25b
Description
cell division cycle 25B [Source:MGI Symbol;Acc:MGI:99701]
Coordinates
chr2:131193239-131197088:+
Coord C1 exon
chr2:131193239-131193412
Coord A exon
chr2:131194115-131194177
Coord C2 exon
chr2:131196977-131197088
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGACTCATGCTCCCCTTCAGGCC
3' ss Score
8.41
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
Exon sequences
Seq C1 exon
GATCTCATCATGTTCAGCAAGTGCCAGAGGCTCTTCCGCTCCCCATCCATGCCATGCAGTGTGATCCGACCCATCCTCAAGAGGCTAGAGCGGCCCCAGGACCGGGATGTGCCTGTCCAGAGCAAGCGCAGGAAAAGTGTGACACCCCTGGAAGAGCAGCAGCTTGAAGAACCT
Seq A exon
GCCTTCCTCCTGCAGACCGTGGATGGCAAACACCAAGACCTTAAGTACATCTCACCAGAAACT
Seq C2 exon
GTGCCGCTTCATCAGGGAACGGGACCGTGCAGCTAACGACTACCCCAGCCTGTACTACCCGGAGATGTACATCCTCAAAGGCGGCTACAAGGAGTTCTTCCCACAGCATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027330_MULTIEX1-3/5=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.374 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(21.1=100)
A:
NO
C2:
PF0058115=Rhodanese=PD(32.4=92.1)
Main Skipping Isoform:
ENSMUST00000028804fB915
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGCAGGAAAAGTGTGACA
R:
CTCCTTGTAGCCGCCTTTGAG
Band lengths:
145-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types