MmuEX0010360 @ mm10
Exon Skipping
Gene
ENSMUSG00000027330 | Cdc25b
Description
cell division cycle 25B [Source:MGI Symbol;Acc:MGI:99701]
Coordinates
chr2:131194339-131197088:+
Coord C1 exon
chr2:131194339-131194437
Coord A exon
chr2:131194626-131194759
Coord C2 exon
chr2:131196977-131197088
Length
134 bp
Sequences
Splice sites
3' ss Seq
ACCCCCAGATCCTCTGACAGAAT
3' ss Score
2.95
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
ATGGTGGCCCTGTTAACAGGCAAGTTCAGCAACATCGTGGAGAAATTTGTCATTGTGGACTGCAGATACCCCTATGAGTATGAAGGCGGGCATATCAAG
Seq A exon
AATGCTGTGAACCTGCCCCTGGAACGGGATGCTGAGACCTTTCTGCTGCAGCGTCCCATCATGCCTTGTAGCCTGGACAAGAGAATCATCCTCATTTTCCACTGTGAATTCTCGTCTGAGCGTGGACCACGAAT
Seq C2 exon
GTGCCGCTTCATCAGGGAACGGGACCGTGCAGCTAACGACTACCCCAGCCTGTACTACCCGGAGATGTACATCCTCAAAGGCGGCTACAAGGAGTTCTTCCCACAGCATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027330_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PU(25.0=81.8)
A:
PF0058115=Rhodanese=FE(40.7=100)
C2:
PF0058115=Rhodanese=PD(32.4=92.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGGCCCTGTTAACAG
R:
CGGATGCTGTGGGAAGAACTC
Band lengths:
211-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types