RnoEX0018917 @ rn6
Exon Skipping
Gene
ENSRNOG00000021248 | Cdc25b
Description
cell division cycle 25B [Source:RGD Symbol;Acc:621500]
Coordinates
chr3:123738885-123740207:+
Coord C1 exon
chr3:123738885-123738983
Coord A exon
chr3:123739170-123739303
Coord C2 exon
chr3:123740096-123740207
Length
134 bp
Sequences
Splice sites
3' ss Seq
ACCCCCAGATCCTCTGACAGAAT
3' ss Score
2.95
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
ATGGTGGCCCTGTTGACAGGCAAGTTCAGCAACATCGTGGAGAAGTTTGTAATTGTGGACTGCAGATACCCCTATGAGTATGAAGGCGGGCATATCAAG
Seq A exon
AATGCTGTGAACTTGCCCCTGGAACCGGATGCCGAGACCTTTCTGCTGAAGCATCCCATCACGCCTTGTAACCTGGACAAGAGAATCATCCTCATTTTCCACTGTGAATTCTCATCTGAGCGTGGACCACGGAT
Seq C2 exon
GTGCCGCTTCATCAGGGAACGGGACCGTGCAGCTAACGACTATCCCAGCCTGTACTACCCTGAGATGTACATCCTCAAAGGCGGCTACAAGGAGTTCTTCCCGCAGCATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021248_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PU(25.0=81.8)
A:
PF0058115=Rhodanese=FE(40.7=100)
C2:
PF0058115=Rhodanese=PD(32.4=92.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGGCCCTGTTGACAG
R:
GGATGCTGCGGGAAGAACTC
Band lengths:
210-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]