DreEX0020128 @ danRer10
Exon Skipping
Gene
ENSDARG00000010792 | cdc25b
Description
cell division cycle 25B [Source:ZFIN;Acc:ZDB-GENE-000330-5]
Coordinates
chr13:14784342-14788381:-
Coord C1 exon
chr13:14788283-14788381
Coord A exon
chr13:14787951-14788196
Coord C2 exon
chr13:14784342-14785520
Length
246 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTTGTCGTCTTTCAGGGT
3' ss Score
12.38
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
ATGGTTAAAGCAATGAGTGGACAGTTTCAAGATCTAGTGGAGAGGCTGTTTGTTATCGACTGCCGTTATCCGTATGAGTATGAAGGCGGCCATATTAAA
Seq A exon
GGTGCTCTTAATCTCCACCAAGAGGATCAAATCGAAGACTACTTTTTACGCAGTCCTATTCTCCCTGACTGCCCCAAGAAGCGCGTCCTGCTGATTTTTCACTGTGAATTTTCTTCAGAGCGTGGTCCACGGATGTGTCGCTACGTTAGAGAAAGAGATCGATTTGTGAATGAATACCCCAACCTCCATTACCCCGAACTCTATATCCTGAAAGGAGGCTACAAAGAATTTTTCCAGATTCACAAA
Seq C2 exon
GCAATATGTGAGCCCCAGATGTATAGACCGATGCTTCATGAAGAGTTTAAAGAAGACCTGAGAAAGTTTCGTCTGAAGAGCCGCACCTGGGCCGGAGAACGCAGCAAGAGAGACATGTACAGCCGTCTCAAAAAACTCTGAGGCTCGCCAAAGTGCTCATGATTTTACGGTCTTTTTGCTCATGCTGCCTTCATAACATGAGCCATGGCAGAGACCTGAAGACATACATGTGTGTGTTCAGTGCGGGAACCTTTCTGCGTTTCAGGGTTTGACATTAAAAGAGGACGAGAGGTTATTTTGAGTCTCTGGCTGTTTGTTTTGATGTCATCACTTTTAAACTGCCACTTTCTTTTATATATATTTTTTTTAAATAATAATAACTATTGATCTCCCTTTACAAGTACACTGCGGCAAAGACACTGTCATGAACTGTTTTAAACGAACTAGAATTTGTATTCTCAGGTTTTTTTATTTTTTTATTTTTTTTTATTTTTTATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010792-'17-23,'17-21,18-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PU(25.9=84.8)
A:
PF0058115=Rhodanese=PD(72.2=95.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTATGAGTATGAAGGCGGCC
R:
TGAAACGCAGAAAGGTTCCCG
Band lengths:
293-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]