RnoEX0018910 @ rn6
Exon Skipping
Gene
ENSRNOG00000021248 | Cdc25b
Description
cell division cycle 25B [Source:RGD Symbol;Acc:621500]
Coordinates
chr3:123739170-123741339:+
Coord C1 exon
chr3:123739170-123739303
Coord A exon
chr3:123740096-123740207
Coord C2 exon
chr3:123740362-123741339
Length
112 bp
Sequences
Splice sites
3' ss Seq
CACCTCCCATGATACTCCAGGTG
3' ss Score
7.13
5' ss Seq
CCGGTACCA
5' ss Score
4.7
Exon sequences
Seq C1 exon
AATGCTGTGAACTTGCCCCTGGAACCGGATGCCGAGACCTTTCTGCTGAAGCATCCCATCACGCCTTGTAACCTGGACAAGAGAATCATCCTCATTTTCCACTGTGAATTCTCATCTGAGCGTGGACCACGGAT
Seq A exon
GTGCCGCTTCATCAGGGAACGGGACCGTGCAGCTAACGACTATCCCAGCCTGTACTACCCTGAGATGTACATCCTCAAAGGCGGCTACAAGGAGTTCTTCCCGCAGCATCCG
Seq C2 exon
AACTTTTGTGAGCCCCAGGACTACCGACCCATGAACCATGCAGCTTTCCGGGATGAGCTGAGGAACTTCCGCCTCAAGACACGCAGCTGGGCTGGGGAACGGAGCAGGAGGGAACTCTGTAGCAGGCTGCAAGACCAGTGACGAGCCAGCCTCAGTCCTGCCACCATCCTTACCTCAGGAGGCTTGCGAGCCAGTGGGTCCCATGGGCCTATGCGGCCACCTACTTGCTAGAGGCCTCAGGTGCTATAGGGGGTTGGGGGGATGGTGTGGTGTCACATCTGTCTGTCCCTGTCCTCAATTTTCCTGTCTCACTCCACTAATTTTCTGTATCTTGGTACTGATCCCATCTTAAAGAGCTGAACCAATGGGTGAATACCAGCTAAGAGGAAGTCCTTTGTGTTCAATGAGAGCCCTTTTACAATCTCCTTTTTCCTTGTTTGTGTTGACTCCTTGTCTTACCCCTTCGCAGGGAGAGCCTCAGCCCTTTAAGATGAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021248-'30-29,'30-28,33-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=FE(40.7=100)
A:
PF0058115=Rhodanese=PD(32.4=92.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCCGAGACCTTTCTGCTG
R:
GTCTTGCAGCCTGCTACAGAG
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]