BtaEX6065042 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008436 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr13:51853965-51856350:-
Coord C1 exon
chr13:51856217-51856350
Coord A exon
chr13:51855405-51855516
Coord C2 exon
chr13:51853965-51855250
Length
112 bp
Sequences
Splice sites
3' ss Seq
CACACCCCTACTGGTCGCAGGTG
3' ss Score
5.56
5' ss Seq
CCGGTACCA
5' ss Score
4.7
Exon sequences
Seq C1 exon
ACTGCTGTGAACCTGCCTCTGGAACGGGATGCCGAGACCTTCCTGCTACAGAGCCCCATCACACCCTGCAGCCTGGATAAGAGAATCATCCTCATTTTCCACTGTGAATTTTCATCTGAGCGGGGCCCCCGCAT
Seq A exon
GTGCCGTTTCATCAGGGAACGAGACAGAGCCTCCAACGACTACCCCAGCCTCTACTATCCTGAGATGTATATCCTCAAAGGCGGCTACAAGGACTTCTTCCCACAGCACCCG
Seq C2 exon
ACCTTCTGTGAGCCTCAAGACTACCGGCCCATGAACCATGAGGACTTCAAGGATGAAATGAAGACCTTCCGACTCAAGACACGCAGCTGGGCTGGCGAGCGGAGCCGGCGAGAGCTTTGCAGCCGCCTGCAGGACCAGTGAAGGGCCAGCAACTGTCCCACCCGCCTTCCTTACTTTGTGCGGCCTGGGCATCAGCCGCCCTGTGGCCTCCGGGGCTGAGGGTCTGCTGTCCAGGGAAAAGATGGTGAGGGCGTCCTGTCTGCCTGCACCAGCCCTGATCCTCTGTCTCACTCCAGTCATGTTCCGTATCCTGGTGACACCCCCATCCTCACTCCAGGAGAGCCCAGCCTGCTGACTAAGTGAAATTGGATTAAGTCTAGCTCAAAGGAAGTATTTGTGTCTAACAGGAGCCTTTTTGGTGTCTTTTTCTTCCTTGTTTGGGTTAACCCTTTGTCTTGCTGTATTCAGAAAAGCCTCTTTTTTCCTAAGAGCTTTGTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008436-'18-16,'18-15,19-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=FE(40.7=100)
A:
PF0058115=Rhodanese=PD(32.4=92.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCAGCCTGGATAAGAGA
R:
AGGCCGCACAAAGTAAGGAAG
Band lengths:
257-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]