GgaEX6018025 @ galGal4
Exon Skipping
Gene
ENSGALG00000004934 | CDC25A
Description
M-phase inducer phosphatase 1 [Source:RefSeq peptide;Acc:NP_001186501]
Coordinates
chr2:575510-576480:+
Coord C1 exon
chr2:575510-575608
Coord A exon
chr2:576125-576255
Coord C2 exon
chr2:576369-576480
Length
131 bp
Sequences
Splice sites
3' ss Seq
GGGTGCGGCTGCCTTCACAGGGT
3' ss Score
6.14
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
ATTGTGTCTGTCCTGACTGGAAAGTTTGCAAGCTTCATTAAGGAGTGTGTGATCATTGACTGTCGCTATCCGTACGAGTACGAAGGAGGACACATCAAG
Seq A exon
GGTGCTGTAAACCTCCACATGGAGGAGGATGTGGAAGACTTTCTGCTTAAGAACCCAATCCCTCCCTCGAAGAACAAACGGGTGATCATCGTCTTCCACTGCGAGTTCTCCTCGGAGCGGGGGCCCCGGAT
Seq C2 exon
GTGCCGCTTTGTGAGGGAGCGGGACAGGCTGGGGAATGAGTACCCCAACCTGCATTACCCAGAGCTGTACGTCCTCAAGGGGGGGTACAGAGACTTCTTCCTGCGATGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934-'25-27,'25-25,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PU(26.2=84.8)
A:
PF0058115=Rhodanese=FE(40.2=100)
C2:
PF0058115=Rhodanese=PD(31.8=89.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGTCTGTCCTGACTGGA
R:
CGGCATCGCAGGAAGAAGTC
Band lengths:
210-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]