MmuEX6069234 @ mm10
Exon Skipping
Gene
ENSMUSG00000032477 | Cdc25a
Description
cell division cycle 25A [Source:MGI Symbol;Acc:MGI:103198]
Coordinates
chr9:109889032-109893895:+
Coord C1 exon
chr9:109889032-109889130
Coord A exon
chr9:109889711-109889841
Coord C2 exon
chr9:109892079-109893895
Length
131 bp
Sequences
Splice sites
3' ss Seq
AGTGTCTGCTGTCTCCACAGGGT
3' ss Score
10.48
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
ATGGCATCTGTTTTGAATGGCAAGTTTGCCGGTCTCATTAAAGAGTTTGTTATCATTGACTGCCGATACCCATATGAGTATGAAGGAGGTCACATCAAG
Seq A exon
GGTGCCGTGAATCTGCACATGGAAGAAGAGGTTGAAGACTTCTTACTTAAGAACCCTATTGTGCCTACTGATGGCAAGCGTGTCATTGTCGTGTTCCACTGTGAGTTTTCCTCTGAAAGAGGCCCTCGAAT
Seq C2 exon
TCTCACTGTGAACCCCCCAGCTACCGGCCAATGCACCATGAAGACTTTAAAGAAGACCTAAAGAAGTTCCGCACCAAGAGCCGGACCTGGGCAGGAGAAAAGAGCAAAAGAGAGATGTACAGTCGCCTGAAGAAGCTCTGAAGCCAAATGGTAGCAGCCTGAGCTTCCCTCTGCCCCGTCCCTTTTCCCTTTGCTGCAGAGCAGTAAGCAAAGGGGCCAGCTGTACGGTACCTGGAGAAAGACCTGGGCCTTCCATTCCTTGGACCTGTCTCCTACACTCCCAGGTTGGAGCCTAGGGCACCCTGCCGTTACACTCTTCTGTTCTGTAAGAGTCCTTCCCTGTCAGGACTGTCTGCCAAAGCTGGACAAGCACAGCACAGACTGGAGTCTGCAACACCGTGTTAGGCTGCTCTCACTGAGCATCCCATGAAGAAGGCCTTATTGGGTAGACCCTGGCCTGTCACGAGGAGAGAAAAGCCGCCCAAGTGCTGCTGGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032477-'11-28,'11-26,19-28=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PU(25.9=84.8)
A:
PF0058115=Rhodanese=FE(39.8=100)
C2:
PF0058115=Rhodanese=PD(3.9=14.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTGACTGCCGATACCCAT
R:
CTGCAGCAAAGGGAAAAGGGA
Band lengths:
246-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types