MmuEX6069234 @ mm9
Exon Skipping
Gene
ENSMUSG00000032477 | Cdc25a
Description
cell division cycle 25 homolog A (S. pombe) [Source:MGI Symbol;Acc:MGI:103198]
Coordinates
chr9:109791536-109794360:+
Coord C1 exon
chr9:109791536-109791634
Coord A exon
chr9:109792215-109792345
Coord C2 exon
chr9:109794249-109794360
Length
131 bp
Sequences
Splice sites
3' ss Seq
AGTGTCTGCTGTCTCCACAGGGT
3' ss Score
10.48
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
ATGGCATCTGTTTTGAATGGCAAGTTTGCCGGTCTCATTAAAGAGTTTGTTATCATTGACTGCCGATACCCATATGAGTATGAAGGAGGTCACATCAAG
Seq A exon
GGTGCCGTGAATCTGCACATGGAAGAAGAGGTTGAAGACTTCTTACTTAAGAACCCTATTGTGCCTACTGATGGCAAGCGTGTCATTGTCGTGTTCCACTGTGAGTTTTCCTCTGAAAGAGGCCCTCGAAT
Seq C2 exon
GTGCCGATATGTGAGAGAGAGAGATAGGCTCGGCAATGAGTACCCCAAGCTCCACTACCCTGAGCTGTATGTCCTGAAGGGGGGATACAAGGAGTTCTTTTTGAAGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032477-'18-25,'18-24,20-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PU(25.9=84.8)
A:
PF0058115=Rhodanese=FE(39.8=100)
C2:
PF0058115=Rhodanese=PD(32.4=92.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATCTGTTTTGAATGGCA
R:
CTGGCACTTCAAAAAGAACTCCT
Band lengths:
210-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: