RnoEX0018896 @ rn6
Exon Skipping
Gene
ENSRNOG00000020737 | Cdc25a
Description
cell division cycle 25A [Source:RGD Symbol;Acc:621498]
Coordinates
chr8:117967074-117969582:+
Coord C1 exon
chr8:117967074-117967172
Coord A exon
chr8:117967396-117967495
Coord C2 exon
chr8:117969471-117969582
Length
100 bp
Sequences
Splice sites
3' ss Seq
AGTGTCTGCTGTCTTCACAGGGT
3' ss Score
8.91
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
ATGGCATCTGTTTTGAATGGCAAGTTTGCCAATCTCATTAAAGAGTTTGTTATCATTGACTGCCGATACCCATATGAATATGAAGGAGGGCACATCAAG
Seq A exon
GGTGCCGTGAACTTGCACATGGAAGAAGAGGTTGAGGAGTTCTTACTCAAGAAACCTATCGTGCCCGCTGACGGCAAGCGTGTCATTGTCGTGTTCCACT
Seq C2 exon
GTGCCGATATGTACGGGAACGAGATAGGCTTGGCAATGAATACCCCAAACTCCATTACCCTGAGCTGTATGTCCTGAAGGGGGGATACAAGGAGTTCTTTTTGAAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020737-'16-20,'16-19,17-20
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PU(25.9=84.8)
A:
PF0058115=Rhodanese=FE(39.8=100)
C2:
PF0058115=Rhodanese=PD(32.4=92.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATCTGTTTTGAATGGCA
R:
CTGGCATTTCAAAAAGAACTCCTTGT
Band lengths:
210-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]