MmuEX6105283 @ mm10
Exon Skipping
Gene
ENSMUSG00000027330 | Cdc25b
Description
cell division cycle 25B [Source:MGI Symbol;Acc:MGI:99701]
Coordinates
chr2:131194626-131198495:+
Coord C1 exon
chr2:131194626-131194759
Coord A exon
chr2:131196977-131197088
Coord C2 exon
chr2:131197229-131198495
Length
112 bp
Sequences
Splice sites
3' ss Seq
CTCCTCCAATGTTGCTCCAGGTG
3' ss Score
9.56
5' ss Seq
CCGGTACTA
5' ss Score
4.42
Exon sequences
Seq C1 exon
AATGCTGTGAACCTGCCCCTGGAACGGGATGCTGAGACCTTTCTGCTGCAGCGTCCCATCATGCCTTGTAGCCTGGACAAGAGAATCATCCTCATTTTCCACTGTGAATTCTCGTCTGAGCGTGGACCACGAAT
Seq A exon
GTGCCGCTTCATCAGGGAACGGGACCGTGCAGCTAACGACTACCCCAGCCTGTACTACCCGGAGATGTACATCCTCAAAGGCGGCTACAAGGAGTTCTTCCCACAGCATCCG
Seq C2 exon
AACTTTTGTGAGCCCCAGGACTACCGACCCATGAACCACGAGGCTTTCAGGGATGAGCTGAGGAACTTTCGCCTTAAGACTCGCAGCTGGGCTGGGGAACGGAGCAGGAGGGAACTTTGTAGCAGGCTGCAAGACCAGTGATGATGAGCCTGCTGCCATCCTTACCTCGTGAGGCTTGGGAGCCAGTGGGTCCCATGGGCCTGTGAGGCCACCTACCTTATAGAGGCCTCAGGTGCTATAGGGGGTTGGGGGCATGGTGTGGTGTCACATCTGTCTGCCCCTGTCCTCAATTTTCCTGTCTCACTCCACTTATTTTCTGTATCTTGGTACTGGTCCCAGCTTAAAGAGCTGAACCTGAGGGTGGATGCCAGCTGAGGAGAAGTCTGTTGTGTTCAGTGGGAGTCCTTTTACAGTCTTTTTTCCTTGTTTGTGTTGACTCTTTGTCTTCCCGCTTTTTGGGGAGAGCCTCAGCCCGTTAGGATGGCACAGTAGCTTCTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027330-'24-30,'24-29,32-30=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=FE(40.7=100)
A:
PF0058115=Rhodanese=PD(32.4=92.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGCTGAGACCTTTCTGC
R:
GGTCTTGCAGCCTGCTACAAA
Band lengths:
245-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types