GgaEX1013953 @ galGal4
Exon Skipping
Gene
ENSGALG00000004934 | CDC25A
Description
M-phase inducer phosphatase 1 [Source:RefSeq peptide;Acc:NP_001186501]
Coordinates
chr2:576125-578601:+
Coord C1 exon
chr2:576125-576255
Coord A exon
chr2:576369-576480
Coord C2 exon
chr2:577772-578601
Length
112 bp
Sequences
Splice sites
3' ss Seq
AATTGGGGTCTCCTCTGCAGGTG
3' ss Score
9.09
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GGTGCTGTAAACCTCCACATGGAGGAGGATGTGGAAGACTTTCTGCTTAAGAACCCAATCCCTCCCTCGAAGAACAAACGGGTGATCATCGTCTTCCACTGCGAGTTCTCCTCGGAGCGGGGGCCCCGGAT
Seq A exon
GTGCCGCTTTGTGAGGGAGCGGGACAGGCTGGGGAATGAGTACCCCAACCTGCATTACCCAGAGCTGTACGTCCTCAAGGGGGGGTACAGAGACTTCTTCCTGCGATGCCGG
Seq C2 exon
AGCTTCTGTGAGCCCCAGAGCTACCGCCCCATGCACCACGAGGACTTTAAAGAGGACTTGAAAAGATTTCGCACCAAGAGCCGAACCTGGGCTGGTGAGAGGAGCAAACGGGAACTGTACAGTCGCTTGAAGAAACTCTGAGGGCCAAAAAAGTGAACAAAGACTGCACCCCATGGCAGGGGGAAAGCTGCAGCCTGCTCCTTGCCGGCAGCTGTCTGGTGTCTGCTCTCCTCATCTCTTGTCCTACTGGGAACGCTGCAGCCACCACTGGAACTGAGCAACCTGGGTGCTGGCTGGGAGCTGACTCCTGGGGCAGTGTGCTGCTCTATGGGGACGGCTTTGCACATCACCACATCCCCCAACTGCCCCACGACCCCCAGGGGTGGAGGAGGCTGCGGTGCCGCGTGTGTGTGGGGCACGGCTGGTGCGAGCAGTGAGGGTCTTTTAGTGCTGGTAGCTTTTAAATGCCTTGTTTTAATTTAAATACAGTCCAATGAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934-'26-29,'26-27,27-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=FE(40.2=100)
A:
PF0058115=Rhodanese=PD(31.8=89.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTCGAAGAACAAACGGG
R:
TGGGGTGCAGTCTTTGTTCAC
Band lengths:
243-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]