RnoEX0018897 @ rn6
Exon Skipping
Gene
ENSRNOG00000020737 | Cdc25a
Description
cell division cycle 25A [Source:RGD Symbol;Acc:621498]
Coordinates
chr8:117967396-117971519:+
Coord C1 exon
chr8:117967396-117967526
Coord A exon
chr8:117969471-117969582
Coord C2 exon
chr8:117969781-117971519
Length
112 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTTCCTCTTCCCTAGGTG
3' ss Score
12.97
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGTGCCGTGAACTTGCACATGGAAGAAGAGGTTGAGGAGTTCTTACTCAAGAAACCTATCGTGCCCGCTGACGGCAAGCGTGTCATTGTCGTGTTCCACTGTGAGTTCTCCTCTGAGAGAGGCCCTCGGAT
Seq A exon
GTGCCGATATGTACGGGAACGAGATAGGCTTGGCAATGAATACCCCAAACTCCATTACCCTGAGCTGTATGTCCTGAAGGGGGGATACAAGGAGTTCTTTTTGAAATGCCAG
Seq C2 exon
TCTCACTGTGAACCCCCCAGCTACCGACCGATGCACCATGAAGACTTTAAAGAAGACCTAAAGAAGTTCCGCACCAAGAGCCGGACCTGGGCAGGGGAGAAGAGCAAAAGGGAGATGTACAGTCGCCTGAAGAAGCTTTGAGGCCAAATGGCAGTGACCTGAGCTTCCCTCCGCCCTGTCCCTTTGTCCCTTTGCTGTAGAGCAGTAAGCAAAGGGGCCAGCTATACGGCACCTGGACCCTGGAGAAAAACCTGGGCCTTCCATGCCTTGAACCTCCTACACTCCCAGGTTGGAGCCCAGGGCATCCTGCCGTCACACTCTTCTGTGAGAGTCCTTCCCTGTCAGGACTGTCTGCCAAAGCTGGACAAGCTCGGCACAGGCTGGCACAGGCTCGAGTCTAGTCTGGAACGCCACGTCAGGCTACTCCGACTAAGCATCCCCTGAAGAAGTGCCCAGGCCTCTCATGAGGGGAGAGAAGCCACTGAAGTGCTGCTGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020737-'18-21,'18-20,19-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=FE(39.8=100)
A:
PF0058115=Rhodanese=PD(32.4=92.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTGTCATTGTCGTGTTCC
R:
CAAAGGGACAAAGGGACAGGG
Band lengths:
249-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]