BtaEX6095801 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009586 | CDC25A
Description
Bos taurus cell division cycle 25 homolog A (S. pombe) (CDC25A), mRNA. [Source:RefSeq mRNA;Acc:NM_001101100]
Coordinates
chr22:52262172-52264187:+
Coord C1 exon
chr22:52262172-52262302
Coord A exon
chr22:52263235-52263346
Coord C2 exon
chr22:52263570-52264187
Length
112 bp
Sequences
Splice sites
3' ss Seq
GCTCTGCTTCCCCTTTACAGGTG
3' ss Score
12.43
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGTGCAGTGAACTTGCACATGGAAGAGGAGGTTGAAGAGTTCTTACTCAAGAAGCCTATCGTACCTACGGATGGCAAGCGTGTTATCGTGGTGTTCCACTGCGAGTTCTCTTCTGAGCGCGGCCCTCGCAT
Seq A exon
GTGCCGATACGTGAGAGAGAGGGATCGGCTCGGTAACGAGTACCCCAAACTCCACTACCCAGAGCTGTATGTCCTGAAGGGCGGATACAAGGAGTTCTTCCTGAAATGCCAG
Seq C2 exon
TCTCACTGCGAGCCCCCCAGCTACCGGCCCATGCACCACGAGGACTTTAAAGAAGACCTGAAGAAATTCCGCACCAAGAGCCGGACCTGGGCCGGGGAGAAGAGCAAGAGGGAGATGTACAGCCGCCTGAAGAAGCTCTGAGGGCCTTGCGGCCAGGCGGCGGCAGCCTCCCCGCTCTCCCCACTCCCCTCTTTGCTGCAGAGAAACTTGAGCAAAGGGGCCAGCGGCGCGACACTTGGAGAGAAGGGCGGAGGCTTCCACGTCTTAAACCTACCTCCCACCCTCCCGAGGTTGGAGCCCAGAGTTTCCCACCGCCTCTCCGTCCTTGGAAGACGTCCTTCTTCAGCAGGGCGCTCAGCCAAGGCTGTCACGTGCCGCAGCAGGGTTCCGAGCAGCAGTCAGGGCTTTCTGCCTCCTCCTCCCCCATGGTTGGATGGGCCCCCTGCGGCCTCGCTGGGCACTGGCCTTGTCTCCTGAGGGGAGAGACGGAGAGAAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009586-'14-15,'14-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=FE(39.8=100)
A:
PF0058115=Rhodanese=PD(32.4=92.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGAGTTCTCTTCTGAGCG
R:
GGCCCCTTTGCTCAAGTTTCT
Band lengths:
255-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]