MmuEX0010350 @ mm9
Exon Skipping
Gene
ENSMUSG00000032477 | Cdc25a
Description
cell division cycle 25 homolog A (S. pombe) [Source:MGI Symbol;Acc:MGI:103198]
Coordinates
chr9:109792215-109796392:+
Coord C1 exon
chr9:109792215-109792345
Coord A exon
chr9:109794249-109794360
Coord C2 exon
chr9:109794583-109796392
Length
112 bp
Sequences
Splice sites
3' ss Seq
CCTTCACTTCTTTTCACTAGGTG
3' ss Score
10.19
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGTGCCGTGAATCTGCACATGGAAGAAGAGGTTGAAGACTTCTTACTTAAGAACCCTATTGTGCCTACTGATGGCAAGCGTGTCATTGTCGTGTTCCACTGTGAGTTTTCCTCTGAAAGAGGCCCTCGAAT
Seq A exon
GTGCCGATATGTGAGAGAGAGAGATAGGCTCGGCAATGAGTACCCCAAGCTCCACTACCCTGAGCTGTATGTCCTGAAGGGGGGATACAAGGAGTTCTTTTTGAAGTGCCAG
Seq C2 exon
TCTCACTGTGAACCCCCCAGCTACCGGCCAATGCACCATGAAGACTTTAAAGAAGACCTAAAGAAGTTCCGCACCAAGAGCCGGACCTGGGCAGGAGAAAAGAGCAAAAGAGAGATGTACAGTCGCCTGAAGAAGCTCTGAAGCCAAATGGTAGCAGCCTGAGCTTCCCTCTGCCCCGTCCCTTTTCCCTTTGCTGCAGAGCAGTAAGCAAAGGGGCCAGCTGTACGGTACCTGGAGAAAGACCTGGGCCTTCCATTCCTTGGACCTGTCTCCTACACTCCCAGGTTGGAGCCTAGGGCACCCTGCCGTTACACTCTTCTGTTCTGTAAGAGTCCTTCCCTGTCAGGACTGTCTGCCAAAGCTGGACAAGCACAGCACAGACTGGAGTCTGCAACACCGTGTTAGGCTGCTCTCACTGAGCATCCCATGAAGAAGGCCTTATTGGGTAGACCCTGGCCTGTCACGAGGAGAGAAAAGCCGCCCAAGTGCTGCTGGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032477_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=FE(39.8=100)
A:
PF0058115=Rhodanese=PD(32.4=92.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTGTCATTGTCGTGTTCC
R:
CTGCAGCAAAGGGAAAAGGGA
Band lengths:
254-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: