MmuEX0010350 @ mm10
Exon Skipping
Gene
ENSMUSG00000032477 | Cdc25a
Description
cell division cycle 25A [Source:MGI Symbol;Acc:MGI:103198]
Coordinates
chr9:109889711-109893895:+
Coord C1 exon
chr9:109889711-109889841
Coord A exon
chr9:109891745-109891856
Coord C2 exon
chr9:109892079-109893895
Length
112 bp
Sequences
Splice sites
3' ss Seq
CCTTCACTTCTTTTCACTAGGTG
3' ss Score
10.19
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGTGCCGTGAATCTGCACATGGAAGAAGAGGTTGAAGACTTCTTACTTAAGAACCCTATTGTGCCTACTGATGGCAAGCGTGTCATTGTCGTGTTCCACTGTGAGTTTTCCTCTGAAAGAGGCCCTCGAAT
Seq A exon
GTGCCGATATGTGAGAGAGAGAGATAGGCTCGGCAATGAGTACCCCAAGCTCCACTACCCTGAGCTGTATGTCCTGAAGGGGGGATACAAGGAGTTCTTTTTGAAGTGCCAG
Seq C2 exon
TCTCACTGTGAACCCCCCAGCTACCGGCCAATGCACCATGAAGACTTTAAAGAAGACCTAAAGAAGTTCCGCACCAAGAGCCGGACCTGGGCAGGAGAAAAGAGCAAAAGAGAGATGTACAGTCGCCTGAAGAAGCTCTGAAGCCAAATGGTAGCAGCCTGAGCTTCCCTCTGCCCCGTCCCTTTTCCCTTTGCTGCAGAGCAGTAAGCAAAGGGGCCAGCTGTACGGTACCTGGAGAAAGACCTGGGCCTTCCATTCCTTGGACCTGTCTCCTACACTCCCAGGTTGGAGCCTAGGGCACCCTGCCGTTACACTCTTCTGTTCTGTAAGAGTCCTTCCCTGTCAGGACTGTCTGCCAAAGCTGGACAAGCACAGCACAGACTGGAGTCTGCAACACCGTGTTAGGCTGCTCTCACTGAGCATCCCATGAAGAAGGCCTTATTGGGTAGACCCTGGCCTGTCACGAGGAGAGAAAAGCCGCCCAAGTGCTGCTGGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032477_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=FE(39.8=100)
A:
PF0058115=Rhodanese=PD(32.4=92.1)
C2:
PF0058115=Rhodanese=PD(3.9=14.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTGTCATTGTCGTGTTCC
R:
CTGCAGCAAAGGGAAAAGGGA
Band lengths:
254-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types