GgaEX0006751 @ galGal4
Exon Skipping
Gene
ENSGALG00000004934 | CDC25A
Description
M-phase inducer phosphatase 1 [Source:RefSeq peptide;Acc:NP_001186501]
Coordinates
chr2:574907-575608:+
Coord C1 exon
chr2:574907-574999
Coord A exon
chr2:575350-575412
Coord C2 exon
chr2:575510-575608
Length
63 bp
Sequences
Splice sites
3' ss Seq
AAATGCTGTCTGTTTTCTAGGGT
3' ss Score
8.99
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
AACACAAAAATAGTAAAGACACAGTCCTCTGCAGCAGAAATTGAGAGCATTTTGGCCAGTGACCAGAGGGACCTTATTGGTGACTTCTCAAAG
Seq A exon
GGTTATTTGTTCCACACTGTTGATGGGAAGCATCAAGATTTAAAATACATCGACTCAGAAATG
Seq C2 exon
ATTGTGTCTGTCCTGACTGGAAAGTTTGCAAGCTTCATTAAGGAGTGTGTGATCATTGACTGTCGCTATCCGTACGAGTACGAAGGAGGACACATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934_MULTIEX2-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(11.4=51.6)
A:
NO
C2:
PF0058115=Rhodanese=PU(26.2=84.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCATTTTGGCCAGTGACC
R:
TGTGTCCTCCTTCGTACTCGT
Band lengths:
144-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]