BtaEX0008037 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009586 | CDC25A
Description
Bos taurus cell division cycle 25 homolog A (S. pombe) (CDC25A), mRNA. [Source:RefSeq mRNA;Acc:NM_001101100]
Coordinates
chr22:52259135-52262302:+
Coord C1 exon
chr22:52259135-52259236
Coord A exon
chr22:52261029-52261091
Coord C2 exon
chr22:52262172-52262302
Length
63 bp
Sequences
Splice sites
3' ss Seq
TATTTCTTTCTCTTATTAAGGGT
3' ss Score
8.57
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
ATTCTACATCATCAGTCTTTATCCCTAGCATCTTCCCCAAAAGGGACCATTGAGAACATTTTGGATAATGACCCAAGGGACCTTATAGGAGACTTCTCCAAG
Seq A exon
GGTTACCTCTTTCATACCGTTGCTGGAAAGCATCAGGATTTAAAATACATCTCTCCAGAAATT
Seq C2 exon
GGTGCAGTGAACTTGCACATGGAAGAGGAGGTTGAAGAGTTCTTACTCAAGAAGCCTATCGTACCTACGGATGGCAAGCGTGTTATCGTGGTGTTCCACTGCGAGTTCTCTTCTGAGCGCGGCCCTCGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009586_MULTIEX1-10/11=9-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(7.7=55.9)
A:
NO
C2:
PF0058115=Rhodanese=FE(39.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATAATGACCCAAGGGACCT
R:
GGAACACCACGATAACACGCT
Band lengths:
138-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development