MmuEX0010352 @ mm10
Exon Skipping
Gene
ENSMUSG00000032477 | Cdc25a
Description
cell division cycle 25A [Source:MGI Symbol;Acc:MGI:103198]
Coordinates
chr9:109887248-109889841:+
Coord C1 exon
chr9:109887248-109887346
Coord A exon
chr9:109888874-109888936
Coord C2 exon
chr9:109889711-109889841
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTCATTTTCTAAAGGGT
3' ss Score
8.56
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CTTCCATCCCAGTCTCTATCCCTGATGTCTTCCCCCAAAGGAACCATTGAGAACATTTTGGACAGTGACCCAAGAGACCTTATAGGAGATTTCTCCAAG
Seq A exon
GGTTATCTCTTTAATACAGTCTCTGGGAAGCATCAGGATTTGAAATATATTTCTCCAGAAATT
Seq C2 exon
GGTGCCGTGAATCTGCACATGGAAGAAGAGGTTGAAGACTTCTTACTTAAGAACCCTATTGTGCCTACTGATGGCAAGCGTGTCATTGTCGTGTTCCACTGTGAGTTTTCCTCTGAAAGAGGCCCTCGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032477_MULTIEX2-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(18.8=55.9)
A:
NO
C2:
PF0058115=Rhodanese=FE(39.8=100)
Main Skipping Isoform:
ENSMUST00000094324fB7359
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGTGACCCAAGAGACCT
R:
GGAACACGACAATGACACGCT
Band lengths:
137-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types