RnoEX6019309 @ rn6
Exon Skipping
Gene
ENSRNOG00000021248 | Cdc25b
Description
cell division cycle 25B [Source:RGD Symbol;Acc:621500]
Coordinates
chr3:123738137-123738983:+
Coord C1 exon
chr3:123738137-123738229
Coord A exon
chr3:123738661-123738723
Coord C2 exon
chr3:123738885-123738983
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGCCTCATCCCTCCCTTCAGGCC
3' ss Score
10.06
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
Exon sequences
Seq C1 exon
AAGGCCCGGGTCTTCCGCTCAAAGTCCCTGTGTCACGAGATTGAGAGCATCCTGGACAGTGACCACCGTGGCCTGATTGGAGATTACTCTAAG
Seq A exon
GCCTTCCTCCTGCAGACTGTGGATGGCAAACACCAAGACCTCAAGTACATCTCACCAGAAACT
Seq C2 exon
ATGGTGGCCCTGTTGACAGGCAAGTTCAGCAACATCGTGGAGAAGTTTGTAATTGTGGACTGCAGATACCCCTATGAGTATGAAGGCGGGCATATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021248-'20-24,'20-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(6.0=51.6)
A:
NO
C2:
PF0058115=Rhodanese=PU(25.0=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGCATCCTGGACAGTGA
R:
GCCCGCCTTCATACTCATAGG
Band lengths:
143-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]