HsaEX0014014 @ hg38
Exon Skipping
Gene
ENSG00000158402 | CDC25C
Description
cell division cycle 25C [Source:HGNC Symbol;Acc:HGNC:1727]
Coordinates
chr5:138289501-138292116:-
Coord C1 exon
chr5:138291970-138292116
Coord A exon
chr5:138290639-138290740
Coord C2 exon
chr5:138289501-138289563
Length
102 bp
Sequences
Splice sites
3' ss Seq
GGGAATCTTGTCATCTTCAGGGC
3' ss Score
7.7
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGAGCAGAAGTGGCCTATATCGCTCCCCGTCGATGCCAGAGAACTTGAACAGGCCAAGACTGAAGCAGGTGGAAAAATTCAAGGACAACACAATACCAGATAAAGTTAAAAAAAAGTATTTTTCTGGCCAAGGAAAGCTCAGGAAG
Seq A exon
GGCTTATGTTTAAAGAAGACAGTCTCTCTGTGTGACATTACTATCACTCAGATGCTGGAGGAAGATTCTAACCAGGGGCACCTGATTGGTGATTTTTCCAAG
Seq C2 exon
GTATGTGCGCTGCCAACCGTGTCAGGGAAACACCAAGATCTGAAGTATGTCAACCCAGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158402_MULTIEX1-1/5=C1-2
Average complexity
C1*
Mappability confidence:
89%=100=89%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.519 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PU(71.6=98.0)
A:
PF066178=M-inducer_phosp=PD(14.3=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCAGAAGTGGCCTATATCG
R:
TGTTTCTGGGTTGACATACTTCAGA
Band lengths:
210-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development