DreEX6060727 @ danRer10
Exon Skipping
Gene
ENSDARG00000010792 | cdc25b
Description
cell division cycle 25B [Source:ZFIN;Acc:ZDB-GENE-000330-5]
Coordinates
chr13:14788558-14790517:-
Coord C1 exon
chr13:14790332-14790517
Coord A exon
chr13:14790150-14790236
Coord C2 exon
chr13:14788558-14788620
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTATCTCCTTGTAGGTT
3' ss Score
12.19
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCTGTCATTCGCTGTCGTCCACGTGGGTTGTTCAGATCTCCATCTATGCCCTGTGCAGTCGGGCGCATCCCGCTCAAAAGACCTGAAAGACCACAAGATGAGAACACGCCTGTCCGAGTGAAGAGGAGACGGAGTCTGGCAGGGACACAAGTGTCAACCACAGAGCAGGAGGATGTTGTACATCAG
Seq A exon
GTTCAGAGGTCCAAGTCCTTTAATCACTCACAGATTGAAAGAATGTTGGACACCGATCCTAGTAATGTGATTGGAGATTTTACCAAG
Seq C2 exon
GCTCCTGCACTGCCCACAGTACAAGGAAAACACCAAGAGTTGAAGTACATCACTCCAGAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010792-'14-19,'14-17,15-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=0.552 C2=0.143
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(23.1=100)
A:
PF066178=M-inducer_phosp=PD(5.3=48.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCATCTATGCCCTGTGC
R:
TGTTTTCCTTGTACTGTGGGCA
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]