RnoEX0018908 @ rn6
Exon Skipping
Gene
ENSRNOG00000021248 | Cdc25b
Description
cell division cycle 25B [Source:RGD Symbol;Acc:621500]
Coordinates
chr3:123737757-123738723:+
Coord C1 exon
chr3:123737757-123737930
Coord A exon
chr3:123738137-123738229
Coord C2 exon
chr3:123738661-123738723
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCGTCTGCCTTACTTTCCAGAAG
3' ss Score
9.87
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
Exon sequences
Seq C1 exon
GATCTCATCATGTTCAGCAAGTGCCAGCGGCTTTTCCGCTCTCCATCCATGCCGTGCAGTGTGATCCGGCCCATCCTCAAGAGGCTAGAGCGGCCCCACGACAGGGACGTGCCTGTCCTGAGCAAGCGCAGGAAGAGTGGGACACCCCTGGAAGAGCAGCAGCTTGAAGAACCC
Seq A exon
AAGGCCCGGGTCTTCCGCTCAAAGTCCCTGTGTCACGAGATTGAGAGCATCCTGGACAGTGACCACCGTGGCCTGATTGGAGATTACTCTAAG
Seq C2 exon
GCCTTCCTCCTGCAGACTGTGGATGGCAAACACCAAGACCTCAAGTACATCTCACCAGAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021248-'18-23,'18-18,20-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(21.3=100)
A:
PF066178=M-inducer_phosp=PD(6.0=51.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCCGCTCTCCATCCATGC
R:
TGGTGTTTGCCATCCACAGTC
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]