GgaEX1013960 @ galGal3
Exon Skipping
Gene
ENSGALG00000004934 | CDC25A
Description
NA
Coordinates
chr2:480664-481616:+
Coord C1 exon
chr2:480664-480816
Coord A exon
chr2:481111-481203
Coord C2 exon
chr2:481554-481616
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTAACCTGTCTTCCTCTAGAAC
3' ss Score
11.02
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GCCAGGCGATGCCGCCTCTTTGGCTCTTCATCCCTGCCCAGCGGTGTAGGCAGAACCACCCAGAAAAGAATGGAGAGGTCCCAAGAAGAGAGTTCTCCAGGGAAAAGCAAGAAGAGGAAAAGCCTGCCTGGAGCACAGTCTGAAGACTCAGCG
Seq A exon
AACACAAAAATAGTAAAGACACAGTCCTCTGCAGCAGAAATTGAGAGCATTTTGGCCAGTGACCAGAGGGACCTTATTGGTGACTTCTCAAAG
Seq C2 exon
GGTTATTTGTTCCACACTGTTGATGGGAAGCATCAAGATTTAAAATACATCGACTCAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934-'15-17,'15-15,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.902 A=0.194 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(20.2=100)
A:
PF066178=M-inducer_phosp=PD(6.5=51.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGGCTCTTCATCCCTGCC
R:
TGCTTCCCATCAACAGTGTGG
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]