MmuEX0010351 @ mm10
Exon Skipping
Gene
ENSMUSG00000032477 | Cdc25a
Description
cell division cycle 25A [Source:MGI Symbol;Acc:MGI:103198]
Coordinates
chr9:109884343-109888936:+
Coord C1 exon
chr9:109884343-109884510
Coord A exon
chr9:109887248-109887346
Coord C2 exon
chr9:109888874-109888936
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTACCTTGGATTTCTTACAGCTT
3' ss Score
8.21
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GCCGATCGTTGCGGGCTGTTTGACTCCCCTTCCCCGTGCGGCTCCAGCACTCGGGCGGTGTTGAAGAGAGCAGACCGGTCTCACGAGGAGCCTCCTCGGGGTACAAAGAGGAGGAAGAGTGTGCCCAGCCCTGTGAAGGCGAAGGCGGATGTTCCGGAGCCCGCCCAG
Seq A exon
CTTCCATCCCAGTCTCTATCCCTGATGTCTTCCCCCAAAGGAACCATTGAGAACATTTTGGACAGTGACCCAAGAGACCTTATAGGAGATTTCTCCAAG
Seq C2 exon
GGTTATCTCTTTAATACAGTCTCTGGGAAGCATCAGGATTTGAAATATATTTCTCCAGAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032477_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=0.421 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(23.4=100)
A:
PF066178=M-inducer_phosp=PD(18.8=55.9)
C2:
NO
Main Skipping Isoform:
ENSMUST00000094324fB7358
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCCCTTCCCCGTGC
R:
CTGATGCTTCCCAGAGACTGT
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types