GgaEX1013960 @ galGal4
Exon Skipping
Gene
ENSGALG00000004934 | CDC25A
Description
M-phase inducer phosphatase 1 [Source:RefSeq peptide;Acc:NP_001186501]
Coordinates
chr2:574460-575412:+
Coord C1 exon
chr2:574460-574612
Coord A exon
chr2:574907-574999
Coord C2 exon
chr2:575350-575412
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTAACCTGTCTTCCTCTAGAAC
3' ss Score
11.02
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GCCAGGCGATGCCGCCTCTTTGGCTCTTCATCCCTGCCCAGCGGTGTAGGCAGAACCACCCAGAAAAGAATGGAGAGGTCCCAAGAAGAGAGTTCTCCAGGGAAAAGCAAGAAGAGGAAAAGCCTGCCTGGAGCACAGTCTGAAGACTCAGCG
Seq A exon
AACACAAAAATAGTAAAGACACAGTCCTCTGCAGCAGAAATTGAGAGCATTTTGGCCAGTGACCAGAGGGACCTTATTGGTGACTTCTCAAAG
Seq C2 exon
GGTTATTTGTTCCACACTGTTGATGGGAAGCATCAAGATTTAAAATACATCGACTCAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934_MULTIEX2-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.897 A=0.129 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(20.2=100)
A:
PF066178=M-inducer_phosp=PD(11.4=51.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGGCTCTTCATCCCTGCC
R:
TGCTTCCCATCAACAGTGTGG
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]