HsaEX6055708 @ hg19
Exon Skipping
Gene
ENSG00000164045 | CDC25A
Description
cell division cycle 25 homolog A (S. pombe) [Source:HGNC Symbol;Acc:1725]
Coordinates
chr3:48207321-48215947:-
Coord C1 exon
chr3:48215774-48215947
Coord A exon
chr3:48209336-48209434
Coord C2 exon
chr3:48207321-48207383
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTACCTTTGATTTGTTACAGACT
3' ss Score
8.32
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GACAACCGATGCAAGCTGTTTGACTCCCCTTCCCTGTGTAGCTCCAGCACTCGGTCAGTGTTGAAGAGACCAGAACGATCTCAAGAGGAGTCTCCACCTGGAAGTACAAAGAGGAGGAAGAGCATGTCTGGGGCCAGCCCCAAAGAGTCAACTAATCCAGAGAAGGCCCATGAG
Seq A exon
ACTCTTCATCAGTCTTTATCCCTGGCATCTTCCCCCAAAGGAACCATTGAGAACATTTTGGACAATGACCCAAGGGACCTTATAGGAGACTTCTCCAAG
Seq C2 exon
GGTTATCTCTTTCATACAGTTGCTGGGAAACATCAGGATTTAAAATACATCTCTCCAGAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164045-'10-15,'10-13,11-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.724 A=0.424 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(23.4=100)
A:
PF066178=M-inducer_phosp=PD(12.2=54.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCTGTGTAGCTCCAGCA
R:
CCTGATGTTTCCCAGCAACTGT
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)