BtaEX6095803 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009586 | CDC25A
Description
Bos taurus cell division cycle 25 homolog A (S. pombe) (CDC25A), mRNA. [Source:RefSeq mRNA;Acc:NM_001101100]
Coordinates
chr22:52255235-52261091:+
Coord C1 exon
chr22:52255235-52255411
Coord A exon
chr22:52259135-52259236
Coord C2 exon
chr22:52261029-52261091
Length
102 bp
Sequences
Splice sites
3' ss Seq
CAACCTTTGGTTTGTTACAGATT
3' ss Score
9.26
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GGCAATCGCTGCAAGCTGTTTGACTCCCCTTCAGCGTCGTGTAGCTCTACCATCCGGTCAATGTTGAAAAGACCAGACCGATCACTAGAGGAGTCCCCAGGTGGAAGCAGGAAGCGGAGGAAAAGCGTGGCTGGGGCCAGTCCGGAAGAGGCAGCTAGTCCAGAGAAGCCCCAGGAG
Seq A exon
ATTCTACATCATCAGTCTTTATCCCTAGCATCTTCCCCAAAAGGGACCATTGAGAACATTTTGGATAATGACCCAAGGGACCTTATAGGAGACTTCTCCAAG
Seq C2 exon
GGTTACCTCTTTCATACCGTTGCTGGAAAGCATCAGGATTTAAAATACATCTCTCCAGAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009586-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=0.235 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(23.6=100)
A:
PF066178=M-inducer_phosp=PD(7.7=55.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGCTGCAAGCTGTTTGACT
R:
TGTATTTTAAATCCTGATGCTTTCCA
Band lengths:
222-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]